Preparing the installation
You need the EO (Evolutionary Objects) library, and the CHROMALGEMA
sources. After compilation, the required disk space is
EO
|
120236
|
|
CHROMALGEMA
|
170996
|
stands for all
benchmarks compiled
|
Total
|
292232
|
|
EO installation
Get a recent EO snasphot
there, or check the
SourceForge site of the EO
project.
Download it in your working directory (e.g.
/home/whoami/work),
and uncompress it. This creates an
eo directory there.
Change directory to
my_path_to_eo directory (e.g.
by
prompt$> cd /home/whoami/work/eo).
Depending upon the shell you are running, run
sh_prompt$> ./autogen under sh, bash
csh_prompt$> sh ./autogen under csh, tcsh
(this needs recent versions of automake, autoheader, aclocal and
autoconf...)
Then follow the instructions from the README file. That is: run
prompt$> ./configure
prompt$> make
If you want to check the libraries (recommanded), run
prompt$> make check
If you have Doxygen, you can build a documentation by running
prompt$> make doc
CHROMALGEMA first installation
Create your
my_path_to_chromato
directory (e.g.
/home/whoami/work), and change directory to it.
prompt$> cd my_path_to_chromato (e.g.
cd
/home/whoami/work)
Retrieve the full repository tree using the following commands
-
as a SourceForge project developper via ssh
under sh, bash
sh_prompt$> export CVS_RSH=ssh
under csh, tcsh
csh_prompt$> setenv CVS_RSH ssh
prompt$> cvs -z3
-d:ext:yourpseudo@cvs.sourceforge.net:/cvsroot/chromalgema co -P
chromalgema
where
yourpseudo is your SourceForge pseudo. This will ask
for
your SourceForge password.
Note: you can put in your
.cshrc or
.bashrc
file the
export or
setenv command, to have to
correct environment once for all.
-
through anonymous CVS (this is not yet
activated !)
prompt$> cvs -z3
-d:pserver:anonymous@cvs.sourceforge.net:/cvsroot/chromalgema co -P
chromalgema
Both commands will create under
my_path_to_chromato a
directory
chromalgema
Change to directory
chromalgema
prompt$> cd chromalgema
(e.g. you should now be in
/home/whoami/work/chromalgema)
Edit the file
Makefile.config and change the path to the EO
library, given by the variable DIR_EO:
DIR_EO = my_path_to_eo/eo/src (e.g.
DIR_EO =
/home/whoami/work/eo/src)
Then make the executables you need, which will be created in
my_path_to_chromato/chromalgema/bin
(e.g.
/home/whoami/work/chromalgema/bin). This requires
g++
version >= 3.2.
if you want only
one component case, create
Chromalgema1
by
prompt$> make dim1
if you want only
two components case, create
Chromalgema2
by
prompt$> make dim2
if you want only
three components case, create
Chromalgema3
by
prompt$> make dim3
If you want
all cases, the
global command
prompt$> make all
will create all three executables
.
In order you can run the executables from anywhere, you
have to change your
PATH variable
- if you run
sh, bash, in the
.bashrc file in your
home directory, add the lines
PATH=$PATH:my_path_to_chromato/chromalgema/bin
export PATH
(e.g.
PATH=$PATH:/home/whoami/work/chromalgema/bin/chromalgema/bin
export PATH)
- if you run
csh, tcsh, in the
.cshrc file in your
home directory, add the lines
PATH=$PATH:my_path_to_chromato/chromalgema/bin
setenv PATH
(e.g.
PATH=$PATH:/home/whoami/work/chromalgema/bin/chromalgema/bin
setenv PATH)
You are now in position to use CHROMALGEMA in any directory of your
choice. See the
Using CHROMALGEMA section to check the files you need.
